Package: predmicror
Title: Fitting Predictive Microbiology Models
Version: 1.3.2
Date: 2026-06-05
Authors@R: c(
    person(given = "Vasco", family = "Cadavez", role = c("aut", "cre"),
           email = "vcadavez@ipb.pt",
           comment = c(ORCID = "0000-0002-3077-7414")),
    person(given = "Ursula", family = "Gonzales-Barron", role = "aut",
           email = "ubarron@ipb.pt",
           comment = c(ORCID = "0000-0002-8462-9775"))
    )
Description: Provides predictive microbiology model functions and
        convenience wrappers for fitting primary growth, microbial
        inactivation, dynamic, omnibus, and cardinal parameter models
        to experimental data using nonlinear least squares and related
        mixed-effects or time-varying workflows. Includes helper
        functions for extracting fitted values, calculating model
        diagnostics, and comparing fitted models. Implemented model
        families include those described by: Zwietering et al. (1990)
        <doi:10.1128/AEM.56.6.1875-1881.1990>, Baranyi and Roberts
        (1994) <doi:10.1016/0168-1605(94)90157-0>, Baranyi and Roberts
        (1995) <doi:10.1016/0168-1605(94)00121-L>, Buchanan et al.
        (1997) <doi:10.1006/fmic.1997.0125>, Richards (1959)
        <doi:10.1093/jxb/10.2.290>, Fang et al. (2012)
        <doi:10.1111/j.1750-3841.2012.02873.x>, Fang et al. (2013)
        <doi:10.1016/j.fm.2012.12.005>, Huang (2008)
        <doi:10.1111/j.1750-3841.2008.00785.x>, Huang (2009)
        <doi:10.1016/j.jfoodeng.2008.07.011>, Huang (2013)
        <doi:10.1016/j.foodcont.2012.11.019>, Geeraerd et al. (2005)
        <doi:10.1016/j.ijfoodmicro.2004.11.038>, van Boekel (2002)
        <doi:10.1016/S0168-1605(01)00742-5>, Peleg (1999)
        <doi:10.1016/S0963-9969(99)00081-2>, Mafart et al. (2002)
        <doi:10.1016/S0168-1605(01)00624-9>, Albert and Mafart (2005)
        <doi:10.1016/j.ijfoodmicro.2004.10.016>, Rosso et al. (1993)
        <doi:10.1006/jtbi.1993.1099>, Rosso et al. (1995)
        <doi:10.1128/AEM.61.2.610-616.1995>, and Rosso et al. (1996)
        <doi:10.4315/0362-028X-59.9.944>.
Depends: R (>= 3.4.0)
Imports: graphics, gslnls, nlme, Rdpack, stats, utils
RdMacros: Rdpack
License: GPL (>= 3)
LazyLoad: yes
LazyData: true
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
NeedsCompilation: no
Suggests: knitr, rmarkdown, htmltools, commonmark, shinyAce, testthat
        (>= 3.0.0), ggplot2, deSolve, FME, minpack.lm, reshape2,
        readxl, shiny
VignetteBuilder: knitr
URL: https://fsqanalytics.github.io/predmicror/,
        https://github.com/fsqanalytics/predmicror
BugReports: https://github.com/fsqanalytics/predmicror/issues
Config/testthat/edition: 3
Config/pak/sysreqs: libgsl0-dev
Repository: https://fsqanalytics.r-universe.dev
Date/Publication: 2026-06-14 00:46:54 UTC
RemoteUrl: https://github.com/fsqanalytics/predmicror
RemoteRef: HEAD
RemoteSha: 8b118229158d2f68c602cda81cfb5e7794275e70
Packaged: 2026-10-20 08:13:25 UTC; root
Author: Vasco Cadavez [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3077-7414>),
  Ursula Gonzales-Barron [aut] (ORCID:
    <https://orcid.org/0000-0002-8462-9775>)
Maintainer: Vasco Cadavez <vcadavez@ipb.pt>